Publications

For the complete publication lists, check here or my Google Scholar profile.

Research Highlights and Media

  • SIAM News 2016: Mathematical molecular bioscience and biophysics [Link]
  • SIAM News 2017: Persistent homology analysis of biomolecular data [Link]
  • SIAM News 2020: Math and AI-based repositioning of existing drugs for COVID-19 [Link]
  • SIAM News 2022: Topological artificial intelligence forecasting of future dominant viral variants [Link]
  • SIAM News 2023: Characterizing musical sounds with topological data analysis [Link]
  • SIAM News 2023: Mathematics-assisted directed evolution and protein engineering [Link]
  • SIAM News 2024: Topological deep learning: an emerging paradigm in data science [Link]
  • SIAM News 2026: Commutative algebra meets data science: a new paradigm in mathematical artificial intelligence [Link]
  • D3R Grand Challenge [Link]

Dedicated to those who lost their lives to the pandemic

  • Complete Pandemic-related Publication List [Link]
  • SARS-CoV-2 Mutation Tracker [Link]
  • SARS-CoV-2 Mutation Analyzer [Link]
  • Third-party YouTube video about our work on SARS-CoV-2 [Link]